Introducing InQuanto v4.0

November 19, 2024

Quantinuum is excited to announce the release of InQuanto™ v4.0, the latest version of our advanced quantum computational chemistry software. This update introduces new features and significant performance improvements, designed to help both industry and academic researchers accelerate their computational chemistry work.

If you're new to InQuanto or want to learn more about how to use it, we encourage you to explore our documentation.

InQuanto v4.0 is being released alongside Quantinuum Nexus, our cloud-based platform for quantum software. Users with Nexus access can leverage the `inquanto-nexus` extension to, for example, take advantage of multiple available backends and seamless cloud storage.

In addition, InQuanto v4.0 introduces enhancements that allow users to run larger chemical simulations on quantum computers. Systems can be easily imported from classical codes using the widely supported FCIDUMP file format. These fermionic representations are then efficiently mapped to qubit representations, benefiting from performance improvements in InQuanto operators. For systems too large for quantum hardware experiments, users can now utilize the new `inquanto-cutensornet` extension to run simulations via tensor networks.

These updates enable users to compile and execute larger quantum circuits with greater ease, while accessing powerful compute resources through Nexus.

Quantinuum Nexus 

InQuanto v4.0 is fully integrated with Quantinuum Nexus via the `inquanto-nexus` extension. This integration allows users to easily run experiments across a range of quantum backends, from simulators to hardware, and access results stored in Nexus cloud storage.

Results can be annotated for better searchability and seamlessly shared with others. Nexus also offers the Nexus Lab, which provides a preconfigured Jupyter environment for compiling circuits and executing jobs. The Lab is set up with InQuanto v4.0 and a full suite of related software, enabling users to get started quickly. 

Enhanced Operator Performance

The `inquanto.mappings` submodule has received a significant performance enhancement in InQuanto v4.0. By integrating a set of operator classes written in C++, the team has increased the performance of the module past that of other open-source packages’ equivalent methods. 

Like any other Python package, InQuanto can benefit from delegating tasks with high computational overhead to compiled languages such as C++. This prescription has been applied to the qubit encoding functions of the `inquanto.mappings` submodule, in which fermionic operators are mapped to their qubit operator equivalents. One such qubit encoding scheme is the Jordan-Wigner (JW) transformation. With respect to JW encoding as a benchmarking task, the integration of C++ operator classes in InQuanto v4.0 has yielded an execution time speed-up of two and a half times that of open-source competitors (Figure 1).


Figure 1. Performance comparison of Jordan Wigner (JW) operator mappings for LiH molecule in several basis sets of increasing size. 

This is a substantial increase in performance that all users will benefit from. InQuanto users will still interact with the familiar Python classes such as `FermionOperator` and `QubitOperator` in v4.0. However, when the `mappings` module is called, the Python operator objects are converted to C++ equivalents and vice versa before and after the qubit encoding procedure (Figure 2). With future total integration of C++ operator classes, we can remove the conversion step and push the performance of the `mappings` module further. Tests, once again using the JW mappings scheme, show a 40 times execution time speed-up as compared to open-source competitors (Figure 1).


Figure 2. Representation of the conversion step from Python objects to C++ objects in the qubit encoding processes handled by the `inquanto.mappings` submodule in InQuanto v4.0.

Efficient classical pre-processing implementations such as this are a crucial step on the path to quantum advantage. As the number of physical qubits available on quantum computers increases, so will the size and complexity of the physical systems that can be simulated. To support this hardware upscaling, computational bottlenecks including those associated with the classical manipulation of operator objects must be alleviated. Aside from keeping pace with hardware advancements, it is important to enlarge the tractable system size in situations that do not involve quantum circuit execution, such as tensor network circuit simulation and resource estimation.

Leveraging Tensor Networks

Users with access to GPU capabilities can now take advantage of tensor networks to accelerate simulations in InQuanto v4.0. This is made possible by the `inquanto-cutensornet` extension, which interfaces InQuanto with the NVIDIA® cuTensorNet library. The `inquanto-cutensornet` extension leverages the `pytket-cutensornet` library, which facilitates the conversion of `pytket` circuits into tensor networks to be evaluated using the NVIDIA® cuTensorNet library. This extension increases the size limit of circuits that can be simulated for chemistry applications. Future work will seek to integrate this functionality with our Nexus platform, allowing InQuanto users to employ the extension without requiring access to their own local GPU resources.

Here we demonstrate the use of the `CuTensorNetProtocol` passed to a VQE experiment. For the sake of brevity, we use the `get_system` method of `inquanto.express` to swiftly define the system, in this case H2 using the STO-3G basis-set.

from inquanto.algorithms import AlgorithmVQE
from inquanto.ansatzes import FermionSpaceAnsatzUCCD
from inquanto.computables import ExpectationValue, ExpectationValueDerivative
from inquanto.express import get_system
from inquanto.mappings import QubitMappingJordanWigner
from inquanto.minimizers import MinimizerScipy
from inquanto.extensions.cutensornet import CuTensorNetProtocol


fermion_hamiltonian, space, state = get_system("h2_sto3g.h5")
qubit_hamiltonian = fermion_hamiltonian.qubit_encode()
ansatz = FermionSpaceAnsatzUCCD(space, state, QubitMappingJordanWigner())
expectation_value = ExpectationValue(ansatz, qubit_hamiltonian)
gradient_expression = ExpectationValueDerivative(
	ansatz, qubit_hamiltonian, ansatz.free_symbols_ordered()
)


protocol_tn = CuTensorNetProtocol()
vqe_tn = (
	AlgorithmVQE(
		objective_expression=expectation_value,
		gradient_expression=gradient_expression,
		minimizer=MinimizerScipy(),
		initial_parameters=ansatz.state_symbols.construct_zeros(),
	)		
	.build(protocol_objective=protocol_tn, protocol_gradient=protocol_tn)
	.run()
)
print(vqe_tn.generate_report()["final_value"])

# -1.136846575472054

The inherently modular design of InQuanto allows for the seamless integration of new extensions and functionality. For instance, a user can simply modify existing code using `SparseStatevectorProtocol` to enable GPU acceleration through `inquanto-cutensornet`. It is worth noting that the extension is also compatible with shot-based simulation via the `CuTensorNetShotsBackend` provided by `pytket-cutensornet`.

“Hybrid quantum-classical supercomputing is accelerating quantum computational chemistry research,” said Tim Costa, Senior Director at NVIDIA®. “With Quantinuum’s InQuanto v4.0 platform and NVIDIA’s cuQuantum SDK, InQuanto users now have access to unique tensor-network-based methods, enabling large-scale and high-precision quantum chemistry simulations.”

Classical Code Interface

As demonstrated by our `inquanto-pyscf` extension, we want InQuanto to easily interface with classical codes. In InQuanto v4.0, we have clarified integration with other classical codes such as Gaussian and Psi4. All that is required is an FCIDUMP file, which is a common output file for classical codes. An FCIDUMP file encodes all the one and two electron integrals required to set up a CI Hamiltonian. Users can bring their system from classical codes by passing an FCIDUMP file to the `FCIDumpRestricted` class and calling the `to_ChemistryRestrictedIntegralOperator` method or its unrestricted counterpart, depending on how they wish to treat spin. The resulting InQuanto operator object can be used within their workflow as they usually would.

Exposing TKET Compilation

Users can experiment with TKET’s latest circuit compilation tools in a straightforward manner with InQuanto v4.0. Circuit compilation now only occurs within the `inquanto.protocols` module. This allows users to define which optimization passes to run before and/or after the backend specific defaults, all in one line of code. Circuit compilation is a crucial step in all InQuanto workflows. As such, this structural change allows us to cleanly integrate new functionality through extensions such as `inquanto-nexus` and `inquanto-cutensornet`. Looking forward, beyond InQuanto v4.0, this change is a positive step towards bringing quantum error correction to InQuanto.

Conclusion

InQuanto v4.0 pushes the size of the chemical systems that a user can simulate on quantum computers. Users can import larger, carefully constructed systems from classical codes and encode them to optimized quantum circuits. They can then evaluate these circuits on quantum backends with `inquanto-nexus` or execute them as tensor networks using `inquanto-cutensornet`. We look forward to seeing how our users leverage InQuanto v4.0 to demonstrate the increasing power of quantum computational chemistry. If you are curious about InQuanto and want to read further, our initial release blogpost is very informative or visit the InQuanto website.

How to Access InQuanto

If you are interested in trying InQuanto, please request access or a demo at inquanto@quantinuum.com

About Quantinuum

Quantinuum, the world’s largest integrated quantum company, pioneers powerful quantum computers and advanced software solutions. Quantinuum’s technology drives breakthroughs in materials discovery, cybersecurity, and next-gen quantum AI. With over 500 employees, including 370+ scientists and engineers, Quantinuum leads the quantum computing revolution across continents. 

Blog
August 28, 2025
Quantum Computing Joins the Next Frontier in Genomics
  • The Sanger Institute illustrates the value of quantum computing to genomics research
  • Quantinuum supports developments in a field that promises to deliver a profound and positive societal impact

Twenty-five years ago, scientists accomplished a task likened to a biological moonshot: the sequencing of the entire human genome.

The Human Genome Project revealed a complete human blueprint comprising around 3 billion base pairs, the chemical building blocks of DNA. It led to breakthrough medical treatments, scientific discoveries, and a new understanding of the biological functions of our body.

Thanks to technological advances in the quarter-century since, what took 13 years and cost $2.7 billion then can now be done in under 12 minutes for a few hundred dollars. Improved instruments such as next-generation sequencers and a better understanding of the human genome – including the availability of a “reference genome” – have aided progress, alongside enormous advances in algorithms and computing power.

But even today, some genomic challenges remain so complex that they stretch beyond the capabilities of the most powerful classical computers operating in isolation. This has sparked a bold search for new computational paradigms, and in particular, quantum computing.

Quantum Challenge: Accepted

The Wellcome Leap Quantum for Bio (Q4Bio) challenge is pioneering this new frontier. The program funds research to develop quantum algorithms that can overcome current computational bottlenecks. It aims to test the classical boundaries of computational genetics in the next 3-5 years.

One consortium – led by the University of Oxford and supported by prestigious partners including the Wellcome Sanger Institute, the Universities of Cambridge, Melbourne, and Kyiv Academic University – is taking a leading role.

“The overall goal of the team’s project is to perform a range of genomic processing tasks for the most complex and variable genomes and sequences – a task that can go beyond the capabilities of current classical computers” – Wellcome Sanger Institute press release, July 2025
Selecting Quantinuum

Earlier this year, the Sanger Institute selected Quantinuum as a technology partner in their bid to succeed in the Q4Bio challenge.

Our flagship quantum computer, System H2, has for many years led the field of commercially available systems for qubit fidelity and consistently holds the global record for Quantum Volume, currently benchmarked at 8,388,608 (223).

In this collaboration, the scientific research team can take advantage of Quantinuum’s full stack approach to technology development, including hardware, software, and deep expertise in quantum algorithm development.

“We were honored to be selected by the Sanger Institute to partner in tackling some of the most complex challenges in genomics. By bringing the world’s highest performing quantum computers to this collaboration, we will help the team push the limits of genomics research with quantum algorithms and open new possibilities for health and medical science.” – Rajeeb Hazra, President and CEO of Quantinuum
Quantum for Biology

At the heart of this endeavor, the consortium has announced a bold central mission for the coming year: to encode and process an entire genome using a quantum computer. This achievement would be a potential world-first and provide evidence for quantum computing’s readiness for tackling real-world use cases.

Their chosen genome, the bacteriophage PhiX174, carries symbolic weight, as its sequencing earned Fred Sanger his second Nobel Prize for Chemistry in 1980. Successfully encoding this genome quantum mechanically would represent a significant milestone for both genomics and quantum computing.

Bacteriophage PhiX174, published under a Creative Commons License https://commons.wikimedia.org/wiki/File:Phi_X_174.png

Sooner than many expect, quantum computing may play an essential role in tackling genomic challenges at the very frontier of human health. The Sanger Institute and Quantinuum’s partnership reminds us that we may soon reach an important step forward in human health research – one that could change medicine and computational biology as dramatically as the original Human Genome Project did a quarter-century ago.

“Quantum computational biology has long inspired us at Quantinuum, as it has the potential to transform global health and empower people everywhere to lead longer, healthier, and more dignified lives.” – Ilyas Khan, Founder and Chief Product Officer of Quantinuum

Glossary of terms: Understanding how quantum computing supports complex genomic research


Term Definition
Algorithms
A set of rules or processes for performing calculations or solving computational problems.
Classical Computing Computing technology based on binary information storage (bits represented as 0 or 1).
DNA Sequence The exact order of nucleotides (A, T, C, G) within a DNA molecule.
Genome The complete set of genetic material (DNA) present in an organism.
Graph-based Genome (Sequence Graph) A non-linear network representation of genomic sequences capturing the diversity and relationships among multiple genomes.
High Performance Compute (HPC) Advanced classical computing systems designed for handling computationally intensive tasks, simulations, and data processing.
Pangenome A collection of multiple genome sequences representing genetic diversity within a population or species.
Precision Medicine Tailored medical treatments based on individual genetic, environmental, and lifestyle factors.
Quantinuum The world’s largest quantum computing company, Quantinuum systems lead the world for the rigorous Quantum Volume benchmark and were the first to offer commercial access to highly reliable “Level 2 – resilient” quantum computing.
Quantum Bit (Qubit) Basic unit of quantum information, which unlike classical bits, can exist in multiple states simultaneously (superposition).
Quantum Computing Computing approach using quantum-mechanical phenomena (e.g., superposition, entanglement, interference) for enhanced problem-solving capabilities.
Quantum Pangenomics Interdisciplinary field combining quantum computing with genomics to address computational challenges in analyzing genetic data and pangenomes.
Quantum Volume A specific test of a quantum computer’s performance on complex circuits. The higher the quantum volume the more powerful the system. Quantinuum’s 56-qubit System Model H2 achieved a record quantum volume of 8,388,608 in May 2025.
Quantum Superposition A fundamental quantum phenomenon in which particles can simultaneously exist in multiple states, enabling complex computational tasks.
Sequence Mapping Determining how sequences align or correspond within a larger genomic reference or graph.
Wellcome Leap Quantum for Bio (Q4Bio) Initiative funding research combining quantum computing and biological sciences to address computational challenges.
Wellcome Sanger Institute The Sanger Institute tackles some of the most difficult challenges in genomic research.
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Blog
August 26, 2025
IEEE Quantum Week 2025

Every year, The IEEE International Conference on Quantum Computing and Engineering – or IEEE Quantum Week – brings together engineers, scientists, researchers, students, and others to learn about advancements in quantum computing.

This year’s conference from August 31st – September 5th, is being held in Albuquerque, New Mexico, a burgeoning epicenter for quantum technology innovation and the home to our new location that will support ongoing collaborative efforts to advance the photonics technologies critical to furthering our product development.

Throughout IEEE Quantum Week, our quantum experts will be on-site to share insights on upgrades to our hardware, enhancements to our software stack, our path to error correction, and more.

Meet our team at Booth #507 and join the below sessions to discover how Quantinuum is forging the path to fault-tolerant quantum computing with our integrated full-stack.

September 2nd

Quantum Software Workshop
Quantum Software 2.1: Open Problems, New Ideas, and Paths to Scale
1:15 – 2:10pm MDT | Mesilla

We recently shared the details of our new software stack for our next-generation systems, including Helios (launching in 2025). Quantinuum’s Agustín Borgna will deliver a lighting talk to introduce Guppy, our new, open-source programming language based on Python, one of the most popular general-use programming languages for classical computing.

September 3rd

PAN08: Progress and Platforms in the Era of Reliable Quantum Computing
1:00 – 2:30pm MDT | Apache

We are entering the era of reliable quantum computing. Across the industry, quantum hardware and software innovators are enabling this transformation by creating reliable logical qubits and building integrated technology stacks that span the application layer, middleware and hardware. Attendees will hear about current and near-term developments from Microsoft, Quantinuum and Atom Computing. They will also gain insights into challenges and potential solutions from across the ecosystem, learn about Microsoft’s qubit-virtualization system, and get a peek into future developments from Quantinuum and Microsoft.

BOF03: Exploring Distributed Quantum Simulators on Exa-scale HPC Systems
3:00 – 4:30pm MDT | Apache

The core agenda of the session is dedicated to addressing key technical and collaborative challenges in this rapidly evolving field. Discussions will concentrate on innovative algorithm design tailored for HPC environments, the development of sophisticated hybrid frameworks that seamlessly combine classical and quantum computational resources, and the crucial task of establishing robust performance benchmarks on large-scale CPU/GPU HPC infrastructures.

September 4th

PAN11: Real-time Quantum Error Correction: Achievements and Challenges
1:00 – 2:30pm MDT | La Cienega

This panel will explore the current state of real-time quantum error correction, identifying key challenges and opportunities as we move toward large-scale, fault-tolerant systems. Real-time decoding is a multi-layered challenge involving algorithms, software, compilation, and computational hardware that must work in tandem to meet the speed, accuracy, and scalability demands of FTQC. We will examine how these challenges manifest for multi-logical qubit operations, and discuss steps needed to extend the decoding infrastructure from intermediate-scale systems to full-scale quantum processors.

September 5th

Keynote by NVIDIA
8:00 – 9:30am MDT | Kiva Auditorium

During his keynote talk, NVIDIA’s Head of Quantum Computing Product, Sam Stanwyck, will detail our partnership to fast-track commercially scalable quantum supercomputers. Discover how Quantinuum and NVIDIA are pushing the boundaries to deliver on the power of hybrid quantum and classical compute – from integrating NVIDIA’s CUDA-Q Platform with access to Quantinuum’s industry-leading hardware to the recently announced NVIDIA Quantum Research Center (NVAQC).

Featured Research at the IEEE Poster Session:

Visible Photonic Component Development for Trapped-Ion Quantum Computing
September 2nd from 6:30 - 8:00pm MDT | September 3rd from 9:30 - 10:00am MDT | September 4th from 11:30 - 12:30pm MDT
Authors: Elliot Lehman, Molly Krogstad, Molly P. Andersen, Sara Cambell, Kirk Cook, Bryan DeBono, Christopher Ertsgaard, Azure Hansen, Duc Nguyen, Adam Ollanik, Daniel Ouellette, Michael Plascak, Justin T. Schultz, Johanna Zultak, Nicholas Boynton, Christopher DeRose,Michael Gehl, and Nicholas Karl

Scaling Up Trapped-Ion Quantum Processors with Integrated Photonics
September 2nd from 6:30 - 8:00pm MDT and 2:30 - 3:00pm MDT | September 4th from 9:30 - 10:00am MDT

Authors: Molly Andersen, Bryan DeBono, Sara Campbell, Kirk Cook, David Gaudiosi, Christopher Ertsgaard, Azure Hansen, Todd Klein, Molly Krogstad, Elliot Lehman, Gregory MacCabe, Duc Nguyen, Nhung Nguyen, Adam Ollanik, Daniel Ouellette, Brendan Paver, Michael Plascak, Justin Schultz and Johanna Zultak

Research Collaborations with the Local Ecosystem

In a partnership that is part of a long-standing relationship with Los Alamos National Laboratory, we have been working on new methods to make quantum computing operations more efficient, and ultimately, scalable.

Learn more in our Research Paper: Classical shadows with symmetries

Our teams collaborated with Sandia National Laboratories demonstrating our leadership in benchmarking. In this paper, we implemented a technique devised by researchers at Sandia to measure errors in mid-circuit measurement and reset. Understanding these errors helps us to reduce them while helping our customers understand what to expect while using our hardware.

Learn more in our Research Paper: Measuring error rates of mid-circuit measurements

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Blog
August 25, 2025
We’re not just catching up to classical computing, we’re evolving from it

From machine learning to quantum physics, tensor networks have been quietly powering the breakthroughs that will reshape our society. Originally developed by the legendary Nobel laureate Roger Penrose, they were first used to tackle esoteric problems in physics that were previously unsolvable.

Today, tensor networks have become indispensable in a huge number of fields, including both classical and quantum computing, where they are used everywhere from quantum error correction (QEC) decoding to quantum machine learning.

In this latest paper, we teamed up with luminaries from the University of British Columbia, California Institute of Technology, University of Jyväskylä, KBR Inc, NASA, Google Quantum AI, NVIDIA, JPMorgan Chase, the University of Sherbrooke, and Terra Quantum AG to provide a comprehensive overview of the use of tensor networks in quantum computing.

Standing on the shoulders of giants

Part of what drives our leadership in quantum computing is our commitment to building the best scientific team in the world. This is precisely why we hired Dr. Reza Haghshenas, one of the world’s leading experts in tensor networks, and a co-author on the paper.

Dr. Haghshenas has been researching tensor networks for over a decade across both academia and industry. Dr. Haghshenas did postdoctoral work under Professor Garnet Chan at Caltech, a leading figure in the use of tensor networks for quantum physics and chemistry.

“Working with Dr. Garnet Chan at Caltech was a formative experience for me”, remarked Dr. Haghshenas. “While there, I contributed to the development of quantum simulation algorithms and advanced classical methods like tensor networks to help interpret and simulate many-body physics.”

Since joining Quantinuum, Dr. Haghshenas has led projects that bring tensor network methods into direct collaboration with experimental hardware teams — exploring quantum magnetism on real quantum devices and helping demonstrate early signs of quantum advantage. He also contributes to widely used simulation tools like QUIMB, helping the broader research community access these methods.

Dr. Haghshenas’ work sits in a broad and vibrant ecosystem exploring novel uses of tensor networks. Collaborations with researchers like Dr. Chan at Caltech, and NVIDIA have brought GPU-accelerated tools to bear on the forefront of applying tensor networks to quantum chemistry, quantum physics, and quantum computing.

A powerful simulation tool

Of particular interest to those of us in quantum computing, the best methods (that we know of) for simulating quantum computers with classical computers rely on tensor networks. Tensor networks provide a nice way of representing the entanglement in a quantum algorithm and how it spreads, which is crucial but generally quite difficult for classical algorithms. In fact, it’s partly tensor networks’ ability to represent entanglement that makes them so powerful for quantum simulation. Importantly, it is our in-house expertise with tensor networks that makes us confident we are indeed moving past classical capabilities.

A theory of evolution

Tensor networks are not only crucial to cutting-edge simulation techniques.  At Quantinuum, we're working on understanding and implementing quantum versions of classical tensor network algorithms, from quantum matrix product states to holographic simulation methods. In doing this, we are leveraging decades of classical algorithm development to advance quantum computing.

A topic of growing interest is the role of tensor networks in QEC, particularly in a process known as decoding. QEC works by encoding information into an entangled state of multiple qubits and using syndrome measurements to detect errors. These measurements must then be decoded to identify the specific error and determine the appropriate correction. This decoding step is challenging—it must be both fast (within the qubit’s coherence time) and accurate (correctly identifying and fixing errors). Tensor networks are emerging as one of the most effective tools for tackling this task.

Looking forward (and backwards, and sideways...)

Tensor networks are more than just a powerful computational tool — they are a bridge between classical and quantum thinking. As this new paper shows, the community’s understanding of tensor networks has matured into a robust foundation for advancing quantum computing, touching everything from simulation and machine learning to error correction and circuit design.

At Quantinuum, we see this as an evolutionary step, not just in theory, but in practice. By collaborating with top minds across academia and industry, we're charting a path forward that builds on decades of classical progress while embracing the full potential of quantum mechanics. This transition is not only conceptual but algorithmic, advancing how we formulate and implement methods utilizing efficiently both classical and quantum computing. Tensor networks aren’t just helping us keep pace with classical computing; they’re helping us to transcend it.

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