How we equip our users to unlock the full potential of H-Series Quantum Computers
In a series of recent technical papers, Quantinuum researchers demonstrated the world-leading capabilities of the latest H-Series quantum computers, and the features and tools that make these accessible to our global customers and users.
Our teams used the H-Series quantum computers to directly measure and control non-abelian topological states of matter [1] for the first time, explore new ways to solve combinatorial optimization problems more efficiently [2], simulate molecular systems using logical qubits with error detection [3], probe critical states of matter [4], as well as exhaustively benchmark our very latest system [5].
Part of what makes such rapid technical and scientific progress possible is the effort our teams continually make to develop and improve workflow tools, helping our users to achieve successful results. In this blog post, we will explore the capabilities of three new tools in some detail, discuss their significance, and highlight their impact in recent quantum computing research.
Leakage Detection Gadget in pyTKET
“Leakage” is a quantum error process where a qubit ends up in a state outside the computational subspace and can significantly impact quantum computations. To address this issue, Quantinuum has developed a leakage detection gadget in pyTKET, a python module for interfacing with TKET, our quantum computing toolkit and optimizing compiler. This gadget, presented at the 2022 IEEE International Conference [6], acts as an error detection technique: it detects and excludes results affected by leakage, minimizing its impact on computations. It is also a valuable tool for measuring single-qubit and two-qubit spontaneous emission rates. H-Series users can access this open-source gadget through pyTKET, and an example notebook is available on the pyTKET GitHub repository.
Mid-Circuit Measurement and Qubit Reuse (MCMR) Package
The MCMR package, built as a pyTKET compiler pass, is designed to reduce the number of qubits required for executing many types of quantum algorithms, expanding the scope of what is possible on the current-generation H-Series quantum computers.
As an example, in a recent paper [4], Quantinuum researchers applied this tool to simulate the transverse-field Ising model and used only 20 qubits to simulate a much larger 128 site system (there is more detail below on this work). By measuring qubits early in the circuit, resetting them, and reusing them elsewhere, the package ingests a raw circuit and outputs an optimized circuit that requires fewer quantum resources. Previously, a scientific paper [7] and blog post on MCMR were published highlighting its benefits and applications. H-Series customers can download this package via the Quantinuum user portal.
Quantinuum H2-1 Emulator Release
To enable efficient use of Quantinuum’s 2nd generation processor, the System Model H2, Quantinuum has released the H2-1 emulator to give users greater flexibility with noise-informed state vector emulation. This emulator uses the NVIDIA's cuQuantum SDK to accelerate quantum computing simulation workflows, nearly approaching the limit of full state emulation on conventional classical hardware. The emulator is a faithful representation of the QPU it emulates. This is accomplished by not only using realistic noise models and noise parameters, but also by sharing the same software stack between the QPU and the emulator up until the job is either routed to the QPU or the classical computing processors. Most notable is that the emulator and the QPU use the same compiler allowing subtle and time-dependent errors to be appropriately represented. The H2-1 emulator was initially released as a beta product alongside the System Model H2 quantum computer at launch. It runs on a GPU backend and an upgraded global framework now offering features such as job chunking, incremental resource distribution, mid-execution job cancellation, and partial result return. Detailed information about the emulator can be found in the H2 emulator product datasheet on the Quantinuum website. H-Series customers with an H2 subscription can access the H2-1 emulator via an API or the Microsoft Azure platform.
Enabling Recent Works
Quantinuum's new enabling tools have already demonstrated their efficacy and value in recent quantum computing research, playing a vital role in advancing the field and achieving groundbreaking results. Let's expand on some notable recent examples.
All works presented here benefited from having access to our H-Series emulators; of these two significant demonstrations were the “Creation of Non-Abelian Topological Order and Anyons on a Trapped-Ion Processor” [1] and “Demonstration of improved 1-layer QAOA with Instantaneous Quantum Polynomial” [2]. These demonstrations involved extensive testing, debugging, and experiment design, for which the versatility of the H2-1 emulator proved invaluable, providing initial performance benchmarks in a realistic noisy environment. Researchers relied on the emulator's results to gauge algorithmic performance and make necessary adjustments. By leveraging the emulator's capabilities, researchers were able to accelerate their progress.
The MCMR package was extensively used in benchmarking the System Model H2 quantum computer’s world-leading capabilities [5]. Two application-level benchmarks performed in this work, approximating the solution to a MaxCut combinatorics problem using the quantum approximate optimization algorithm (QAOA) and accurately simulating a quantum dynamics model using a holographic quantum dynamics (HoloQUADS) algorithm, would have been too large to encode on H2's 32 qubits without the MCMR package. Further illustrating the overall value of these tools, in the HoloQUADS benchmark, there is a "bond qubit" that is particularly susceptible to errors due to leakage. The leakage detection gadget was used on this "bond qubit" at the end of the circuit, and any shots with a detected leakage error were discarded. The leakage detection gadget was also used to obtain the rate of leakage error per single-qubit and two-qubit gates, two component-level benchmarks.
In another scientific work [4], the MCMR compilation tool proved instrumental to simulating a transverse-field Ising model on 128 sites, using 20 qubits. With the MCMR package and by leveraging a state-of-the-art classical tensor-network ansatz expressed as a quantum circuit, the Quantinuum team was able to express the highly entangled ground state of the critical Ising model. The team showed that with H1-1's 20 qubits, the properties of this state could be measured on a 128-site system with very high fidelity, enabling a quantitatively accurate extraction of some critical properties of the model.
Key Takeaways
At Quantinuum, we are entirely devoted to producing a quantum hardware, middleware and software stack that leads the world on the most important benchmarks and includes features and tools that provide breakthrough benefit to our growing base of users. In today's NISQ hardware, "benefit" usually takes the form of getting the most performance out of today’s hardware, continually pushing what is considered to be possible. In this blog we describe two examples: error detection and discard using the “leakage detection gadget” and an automated method for circuit optimization for qubit reuse. “Benefit” can also take other forms, such as productivity. Our emulator brings many benefits to our users, but one that resonates the most is productivity. Being a faithful representation of our QPU performance, the emulator is an accessible tool which users have at their disposal to develop and test new, innovative algorithms. The tools and features Quantinuum releases are driven by users’ feedback; whether you are new to H-Series or a seasoned user, please reach-out and let us know how we can help bring benefit to your research and use case.
Footnotes:
[1] Mohsin Iqbal et al., Creation of Non-Abelian Topological Order and Anyons on a Trapped-Ion Processor (2023), arXiv:2305.03766 [quant-ph]
[2] Sebastian Leontica and David Amaro, Exploring the neighborhood of 1-layer QAOA with Instantaneous Quantum Polynomial circuits (2022), arXiv:2210.05526 [quant-ph]
[3] Kentaro Yamamoto, Samuel Duffield, Yuta Kikuchi, and David Muñoz Ramo, Demonstrating Bayesian Quantum Phase Estimation with Quantum Error Detection (2023), arXiv:2306.16608 [quant-ph]
[4] Reza Haghshenas, et al., Probing critical states of matter on a digital quantum computer (2023),
arXiv:2305.01650 [quant-ph]
[5] S. A. Moses, et al., A Race Track Trapped-Ion Quantum Processor (2023), arXiv:2305.03828 [quant-ph]
[6] K. Mayer, Mitigating qubit leakage errors in quantum circuits with gadgets and post-selection, 2022 IEEE International Conference on Quantum Computing and Engineering (QCE), Broomfield, CO, USA, (2022), pp. 809-809, doi: 10.1109/QCE53715.2022.00126.
[7] Matthew DeCross, Eli Chertkov, Megan Kohagen, and Michael Foss-Feig, Qubit-reuse compilation with mid-circuit measurement and reset (2022), arXiv:2210.08039 [quant-ph]
About Quantinuum
Quantinuum, the world’s largest integrated quantum company, pioneers powerful quantum computers and advanced software solutions. Quantinuum’s technology drives breakthroughs in materials discovery, cybersecurity, and next-gen quantum AI. With over 500 employees, including 370+ scientists and engineers, Quantinuum leads the quantum computing revolution across continents.
At Quantinuum, we pay attention to every detail. From quantum gates to teleportation, we work hard every day to ensure our quantum computers operate as effectively as possible. This means not only building the most advanced hardware and software, but that we constantly innovate new ways to make the most of our systems.
A key step in any computation is preparing the initial state of the qubits. Like lining up dominoes, you first need a special setup to get meaningful results. This process, known as state preparation or “state prep,” is an open field of research that can mean the difference between realizing the next breakthrough or falling short. Done ineffectively, state prep can carry steep computational costs, scaling exponentially with the qubit number.
Recently, our algorithm teams have been tackling this challenge from all angles. We’ve published three new papers on state prep, covering state prep for chemistry, materials, and fault tolerance.
In the first paper, our team tackled the issue of preparing states for quantum chemistry. Representing chemical systems on gate-based quantum computers is a tricky task; partly because you often want to prepare multiconfigurational states, which are very complex. Preparing states like this can cost a lot of resources, so our team worked to ensure we can do it without breaking the (quantum) bank.
To do this, our team investigated two different state prep methods. The first method uses Givens rotations, implemented to save computational costs. The second method exploits the sparsity of the molecular wavefunction to maximize efficiency.
Once the team perfected the two methods, they implemented them in InQuanto to explore the benefits across a range of applications, including calculating the ground and excited states of a strongly correlated molecule (twisted C_2 H_4). The results showed that the “sparse state preparation” scheme performed especially well, requiring fewer gates and shorter runtimes than alternative methods.
In the second paper, our team focused on state prep for materials simulation. Generally, it’s much easier for computers to simulate materials that are at zero temperature, which is, obviously, unrealistic. Much more relevant to most scientists is what happens when a material is not at zero temperature. In this case, you have two options: when the material is steadily at a given temperature, which scientists call thermal equilibrium, or when the material is going through some change, also known as out of equilibrium. Both are much harder for classical computers to work with.
In this paper, our team looked to solve an outstanding problem: there is no standard protocol for preparing thermal states. In this work, our team only targeted equilibrium states but, interestingly, they used an out of equilibrium protocol to do the work. By slowly and gently evolving from a simple state that we know how to prepare, they were able to prepare the desired thermal states in a way that was remarkably insensitive to noise.
Ultimately, this work could prove crucial for studying materials like superconductors. After all, no practical superconductor will ever be used at zero temperature. In fact, we want to use them at room temperature – and approaches like this are what will allow us to perform the necessary studies to one day get us there.
Finally, as we advance toward the fault-tolerant era, we encounter a new set of challenges: making computations fault-tolerant at every step can be an expensive venture, eating up qubits and gates. In the third paper, our team made fault-tolerant state preparation—the critical first step in any fault-tolerant algorithm—roughly twice as efficient. With our new “flag at origin” technique, gate counts are significantly reduced, bringing fault-tolerant computation closer to an everyday reality.
The method our researchers developed is highly modular: in the past, to perform optimized state prep like this, developers needed to solve one big expensive optimization problem. In this new work, we’ve figured out how to break the problem up into smaller pieces, in the sense that one now needs to solve a set of much smaller problems. This means that now, for the first time, developers can prepare fault-tolerant states for much larger error correction codes, a crucial step forward in the early-fault-tolerant era.
On top of this, our new method is highly general: it applies to almost any QEC code one can imagine. Normally, fault-tolerant state prep techniques must be anchored to a single code (or a family of codes), making it so that when you want to use a different code, you need a new state prep method. Now, thanks to our team’s work, developers have a single, general-purpose, fault-tolerant state prep method that can be widely applied and ported between different error correction codes. Like the modularity, this is a huge advance for the whole ecosystem—and is quite timely given our recent advances into true fault-tolerance.
This generality isn’t just applicable to different codes, it’s also applicable to the states that you are preparing: while other methods are optimized for preparing only the |0> state, this method is useful for a wide variety of states that are needed to set up a fault tolerant computation. This “state diversity” is especially valuable when working with the best codes – codes that give you many logical qubits per physical qubit. This new approach to fault-tolerant state prep will likely be the method used for fault-tolerant computations across the industry, and if not, it will inform new approaches moving forward.
From the initial state preparation to the final readout, we are ensuring that not only is our hardware the best, but that every single operation is as close to perfect as we can get it.
- The Sanger Institute illustrates the value of quantum computing to genomics research
- Quantinuum supports developments in a field that promises to deliver a profound and positive societal impact
Twenty-five years ago, scientists accomplished a task likened to a biological moonshot: the sequencing of the entire human genome.
The Human Genome Project revealed a complete human blueprint comprising around 3 billion base pairs, the chemical building blocks of DNA. It led to breakthrough medical treatments, scientific discoveries, and a new understanding of the biological functions of our body.
Thanks to technological advances in the quarter-century since, what took 13 years and cost $2.7 billion then can now be done in under 12 minutes for a few hundred dollars. Improved instruments such as next-generation sequencers and a better understanding of the human genome – including the availability of a “reference genome” – have aided progress, alongside enormous advances in algorithms and computing power.
But even today, some genomic challenges remain so complex that they stretch beyond the capabilities of the most powerful classical computers operating in isolation. This has sparked a bold search for new computational paradigms, and in particular, quantum computing.
Quantum Challenge: Accepted
The Wellcome Leap Quantum for Bio (Q4Bio) challenge is pioneering this new frontier. The program funds research to develop quantum algorithms that can overcome current computational bottlenecks. It aims to test the classical boundaries of computational genetics in the next 3-5 years.
One consortium – led by the University of Oxford and supported by prestigious partners including the Wellcome Sanger Institute, the Universities of Cambridge, Melbourne, and Kyiv Academic University – is taking a leading role.
“The overall goal of the team’s project is to perform a range of genomic processing tasks for the most complex and variable genomes and sequences – a task that can go beyond the capabilities of current classical computers” – Wellcome Sanger Institute press release, July 2025
Selecting Quantinuum
Earlier this year, the Sanger Institute selected Quantinuum as a technology partner in their bid to succeed in the Q4Bio challenge.
Our flagship quantum computer, System H2, has for many years led the field of commercially available systems for qubit fidelity and consistently holds the global record for Quantum Volume, currently benchmarked at 8,388,608 (223).
In this collaboration, the scientific research team can take advantage of Quantinuum’s full stack approach to technology development, including hardware, software, and deep expertise in quantum algorithm development.
“We were honored to be selected by the Sanger Institute to partner in tackling some of the most complex challenges in genomics. By bringing the world’s highest performing quantum computers to this collaboration, we will help the team push the limits of genomics research with quantum algorithms and open new possibilities for health and medical science.” – Rajeeb Hazra, President and CEO of Quantinuum
Quantum for Biology
At the heart of this endeavor, the consortium has announced a bold central mission for the coming year: to encode and process an entire genome using a quantum computer. This achievement would be a potential world-first and provide evidence for quantum computing’s readiness for tackling real-world use cases.
Their chosen genome, the bacteriophage PhiX174, carries symbolic weight, as its sequencing earned Fred Sanger his second Nobel Prize for Chemistry in 1980. Successfully encoding this genome quantum mechanically would represent a significant milestone for both genomics and quantum computing.
Sooner than many expect, quantum computing may play an essential role in tackling genomic challenges at the very frontier of human health. The Sanger Institute and Quantinuum’s partnership reminds us that we may soon reach an important step forward in human health research – one that could change medicine and computational biology as dramatically as the original Human Genome Project did a quarter-century ago.
“Quantum computational biology has long inspired us at Quantinuum, as it has the potential to transform global health and empower people everywhere to lead longer, healthier, and more dignified lives.” – Ilyas Khan, Founder and Chief Product Officer of Quantinuum
Every year, The IEEE International Conference on Quantum Computing and Engineering – or IEEE Quantum Week – brings together engineers, scientists, researchers, students, and others to learn about advancements in quantum computing.
This year’s conference from August 31st – September 5th, is being held in Albuquerque, New Mexico, a burgeoning epicenter for quantum technology innovation and the home to our new location that will support ongoing collaborative efforts to advance the photonics technologies critical to furthering our product development.
Throughout IEEE Quantum Week, our quantum experts will be on-site to share insights on upgrades to our hardware, enhancements to our software stack, our path to error correction, and more.
Meet our team at Booth #507 and join the below sessions to discover how Quantinuum is forging the path to fault-tolerant quantum computing with our integrated full-stack.
September 2nd
Quantum Software Workshop
Quantum Software 2.1: Open Problems, New Ideas, and Paths to Scale
1:15 – 2:10pm MDT | Mesilla
We recently shared the details of our new software stack for our next-generation systems, including Helios (launching in 2025). Quantinuum’s Agustín Borgna will deliver a lighting talk to introduce Guppy, our new, open-source programming language based on Python, one of the most popular general-use programming languages for classical computing.
September 3rd
PAN08: Progress and Platforms in the Era of Reliable Quantum Computing
1:00 – 2:30pm MDT | Apache
We are entering the era of reliable quantum computing. Across the industry, quantum hardware and software innovators are enabling this transformation by creating reliable logical qubits and building integrated technology stacks that span the application layer, middleware and hardware. Attendees will hear about current and near-term developments from Microsoft, Quantinuum and Atom Computing. They will also gain insights into challenges and potential solutions from across the ecosystem, learn about Microsoft’s qubit-virtualization system, and get a peek into future developments from Quantinuum and Microsoft.
BOF03: Exploring Distributed Quantum Simulators on Exa-scale HPC Systems
3:00 – 4:30pm MDT | Apache
The core agenda of the session is dedicated to addressing key technical and collaborative challenges in this rapidly evolving field. Discussions will concentrate on innovative algorithm design tailored for HPC environments, the development of sophisticated hybrid frameworks that seamlessly combine classical and quantum computational resources, and the crucial task of establishing robust performance benchmarks on large-scale CPU/GPU HPC infrastructures.
September 4th
PAN11: Real-time Quantum Error Correction: Achievements and Challenges
1:00 – 2:30pm MDT | La Cienega
This panel will explore the current state of real-time quantum error correction, identifying key challenges and opportunities as we move toward large-scale, fault-tolerant systems. Real-time decoding is a multi-layered challenge involving algorithms, software, compilation, and computational hardware that must work in tandem to meet the speed, accuracy, and scalability demands of FTQC. We will examine how these challenges manifest for multi-logical qubit operations, and discuss steps needed to extend the decoding infrastructure from intermediate-scale systems to full-scale quantum processors.
September 5th
Keynote by NVIDIA
8:00 – 9:30am MDT | Kiva Auditorium
During his keynote talk, NVIDIA’s Head of Quantum Computing Product, Sam Stanwyck, will detail our partnership to fast-track commercially scalable quantum supercomputers. Discover how Quantinuum and NVIDIA are pushing the boundaries to deliver on the power of hybrid quantum and classical compute – from integrating NVIDIA’s CUDA-Q Platform with access to Quantinuum’s industry-leading hardware to the recently announced NVIDIA Quantum Research Center (NVAQC).
Featured Research at the IEEE Poster Session:
Visible Photonic Component Development for Trapped-Ion Quantum Computing
September 2nd from 6:30 - 8:00pm MDT | September 3rd from 9:30 - 10:00am MDT | September 4th from 11:30 - 12:30pm MDT
Authors: Elliot Lehman, Molly Krogstad, Molly P. Andersen, Sara Cambell, Kirk Cook, Bryan DeBono, Christopher Ertsgaard, Azure Hansen, Duc Nguyen, Adam Ollanik, Daniel Ouellette, Michael Plascak, Justin T. Schultz, Johanna Zultak, Nicholas Boynton, Christopher DeRose,Michael Gehl, and Nicholas Karl
Scaling Up Trapped-Ion Quantum Processors with Integrated Photonics
September 2nd from 6:30 - 8:00pm MDT and 2:30 - 3:00pm MDT | September 4th from 9:30 - 10:00am MDT
Authors: Molly Andersen, Bryan DeBono, Sara Campbell, Kirk Cook, David Gaudiosi, Christopher Ertsgaard, Azure Hansen, Todd Klein, Molly Krogstad, Elliot Lehman, Gregory MacCabe, Duc Nguyen, Nhung Nguyen, Adam Ollanik, Daniel Ouellette, Brendan Paver, Michael Plascak, Justin Schultz and Johanna Zultak
Research Collaborations with the Local Ecosystem
In a partnership that is part of a long-standing relationship with Los Alamos National Laboratory, we have been working on new methods to make quantum computing operations more efficient, and ultimately, scalable.
Learn more in our Research Paper: Classical shadows with symmetries
Our teams collaborated with Sandia National Laboratories demonstrating our leadership in benchmarking. In this paper, we implemented a technique devised by researchers at Sandia to measure errors in mid-circuit measurement and reset. Understanding these errors helps us to reduce them while helping our customers understand what to expect while using our hardware.
Learn more in our Research Paper: Measuring error rates of mid-circuit measurements